CMAP in NAMD simulation

From: Neelanjana Sengupta (
Date: Sat Oct 14 2006 - 17:26:23 CDT

Hello NAMD experts,

The NAMD 2.6 manual says that " Both NAMD and psfgen (standalone or VMD
plug) read and interpret the new CHARMM 31 stream files (combining topology
and parameters) and the new CMAP crossterm (dihedral-dihedral) potential

Could you tell me how I can implement CMAP can be implemented into a NAMD
simulation of a protein or peptide? (ie. what is the format of input file,


Neelanjana Sengupta
Graduate Student
Dept. of Chemistry
Univ. of California-Irvine,
Irvine, CA 92617

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:42:41 CST