From: Holly Freedman (holly_at_mercury.hec.utah.edu)
Date: Thu Aug 03 2006 - 21:41:55 CDT
Hi NAMD help,
My question is about the "pairinteractionSelf on" calculation. Will this
double count the interactions of atoms within group 1 with each other?
That is does it give configurational energy (with kinetic energy added it
seems) or twice this term?
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