Remove water to close to the protein?

From: Per Jr. Greisen (greisen_at_binf.ku.dk)
Date: Fri May 26 2006 - 07:59:27 CDT

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Hey,

I have solvated my protein and during my minimization I have a lot of
spikes in the beginning - to around 500 steps. My question is:

1. How to remove the waters that are placed too close to the protein

2. And is it possible to identify the spikes from the minimization?

Thanks in advanced

-- 
Best Regards
Per Jr. Greisen

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