Re: Periodic cell has become too small for original patch grid!

From: JC Gumbart (
Date: Thu Apr 13 2006 - 13:21:15 CDT

Could you post your namd configuration file?

Also, how did you measure the size of your system originally? Have you
looked at the dcd in VMD to see if there is any really dramatic

On Apr 13, 2006, at 11:40 AM, lily jin wrote:

> Dear all,
> I got this error messege and then I enlarged the margin of the water
> box from 5 to 8. The useFlexibleCell was set no. The problem was not
> solved. What is the margin you usually set? Is there possibly another
> solution? Thank you very much!
> Lily
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> rates.

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