re force over selection

From: xiaojing gong (
Date: Thu Mar 23 2006 - 19:12:22 CST

Ioana, hi
      Like John said, I think you can use the constrain on your selection, and use IMD to observe each step of simulation in VMD.
Ioana Cozmuta <> д

Is it possible to set up the NAMD configuration file such that it would
take a selection defined in VMD, update it every step and apply a
harmonic constraint on that selection? What is the correct way of doing
it? Does anybody have an example of such a configuration file?

Thank you,

Ioana Cozmuta, Ph.D
Eloret Corporation
NASA Ames Research Center
Mail Stop 230-3
Moffett Field, CA 94035
phone (650) 604-0993

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