Re: is possible to remove the waterbox before running VMD

From: Sterling Paramore (paramore_at_hec.utah.edu)
Date: Thu Mar 09 2006 - 11:50:08 CST

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Use the -i indexfile option of catdcd to produce a new dcd file only
with the atoms of interest.

-Sterling

lily jin wrote:

> I need the waterbox to do simulation. But when I show the result in
> VMD, the waterbox is not necessary, which takes a lot of memory. Is it
> possible to do simulation with waterbox and remove it from the
> trajectory before displaying in VMD?
>
> Thanks!
>
>
> *Lily*
>
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