From: Jerry Ebalunode (jebalunode_at_UH.EDU)
Date: Thu Aug 18 2005 - 14:02:21 CDT
You could get the forcefield parameters from here
http://www.pharmacy.umaryland.edu/faculty/amackere/param/toppar/toppar_c31b1
.tar.gz
-----Original Message-----
From: bo baker [mailto:bo.bybaker_at_gmail.com]
Sent: Thursday, August 18, 2005 1:13 PM
To: jebalunode_at_uh.edu
Cc: namd-l_at_ks.uiuc.edu
Subject: Re: namd-l: errno = 2
Hi, Jerry:
Thank you very much for your helps.
I copy the 'libibmc++.A.dylib' into the './/NAMD_2.6b1_MacOSX-PPC'
directory, and use the command as you suggested. It works this time!!!
Thanks.
But then I have another problem. 'NAMD' complains that it can't find
the force-field of 'par_all27_prot_lipid.inp'. Here is the error
message:
------------- Processor 0 Exiting: Called CmiAbort ------------
Reason: FATAL ERROR: UNABLE TO OPEN CHARMM PARAMETER FILE
../common/par_all27_prot_lipid.inp
Charm++ fatal error:
FATAL ERROR: UNABLE TO OPEN CHARMM PARAMETER FILE
../common/par_all27_prot_lipid.inp
Abort
--------
I thought that it should be included in the NAMD package. Seems that I
need to download this part separately?
All the best
Bo
On 8/18/05, Jerry Ebalunode <jebalunode_at_uh.edu> wrote:
> Hi,
> It seems that variable (DYLD_LIBRARY_PATH) wasn't defined initially so
use
> the following command instead,
>
> setenv DYLD_LIBRARY_PATH /Users/bo/MD/NAMD/NAMD_2.6b1_MacOSX-PPC
>
> this should work if thge full path to libibmc++.A.dylib is
> "/Users/bo/MD/NAMD/NAMD_2.6b1_MacOSX-PPC/libibmc++.A.dylib"
>
>
>
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