How to "extract" coordinates from a DCD trajectory file?

From: Edelmiro Moman (emoman_at_rcsi.ie)
Date: Tue Aug 09 2005 - 07:10:00 CDT

• Next message: Darren Anderson: "Re: How to "extract" coordinates from a DCD trajectory file?"
• Previous message: Uma Mahankali: "namd hangs"
• Next in thread: Darren Anderson: "Re: How to "extract" coordinates from a DCD trajectory file?"
• Reply: Darren Anderson: "Re: How to "extract" coordinates from a DCD trajectory file?"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

Hello,

As you can probably guess, I am new to NAMD.

I would like to create a conformational database from the trajectory file in
order to analyse the results with different programs.

However, the DCD is a binary file.

Is it possible to "extract" the coordinates data for every "snap shot" from
that trajectory file?

If so, how can I do it?

Kind regards,

Miro Moman

(RCSI)

• Next message: Darren Anderson: "Re: How to "extract" coordinates from a DCD trajectory file?"
• Previous message: Uma Mahankali: "namd hangs"
• Next in thread: Darren Anderson: "Re: How to "extract" coordinates from a DCD trajectory file?"
• Reply: Darren Anderson: "Re: How to "extract" coordinates from a DCD trajectory file?"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:41:03 CST