From: Jerry Ebalunode (jebalunode_at_UH.EDU)
Date: Mon Jun 13 2005 - 18:22:51 CDT
Hi,
Assuming you used a CHARMM based forcefield and have access to charmm, you
could follow the example in using charmm to MM-PBSA in the following page at
charmm forums
http://165.112.184.13/ubbthreads/showflat.php?Cat=0&Number=841&an=0&page=2#841
On Monday 13 June 2005 03:41 pm, Wei Chen wrote:
> Hi, all,
>
> Have anybody ever used MM/PBSA method to calculate the absolute binding
> energy with NAMD trajectory? Could you tell me any reference paper
> and protocol?
>
> Thanks!
>
> Wei Chen
>
> --
-- Jerry Ebalunode Ph.D. Candidate RM 402F Houston Science Center Phone: 713-743-8367 Dept. of Biology and Biochemistry University of Houston 4800 Calhoun Road Houston, TX 77204 "No trees were killed in the posting of this message. However a large number of electrons were terribly inconvenienced..." Marcos Topete
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