From: Gengbin Zheng (gzheng_at_ks.uiuc.edu)
Date: Tue May 10 2005 - 01:31:51 CDT
just try run build again with -no-build-shared option:
./build charm++ mpi-linux opteron -no-build-shared
Gengbin
Xiaoqing Wang wrote:
>Dear all,
>
> I compiled charm-5.8 on amd64 with command
>"./build charm++ mpi-linux opteron". But it failed to compile charm++
>shared library. The problem maybe arised from my "libmpich.a". How can
>I solve this problem?
> The compile logfile is as follows
>---------------------------------------------------------------
>[xqwang_at_master charm-5.8]$ ./build charm++ mpi-linux opteron
>Selected Compiler:
>Selected Options: opteron
>Creating dir: mpi-linux-opteron
>Creating dir: mpi-linux-opteron/tmp
>Copying src/scripts/Makefile to mpi-linux-opteron/tmp
>Soft-linking over bin
>Soft-linking over lib
>Soft-linking over lib_so
>Soft-linking over include
>Soft-linking over tmp
>Generating mpi-linux-opteron/tmp/conv-mach-pre.sh
>Generating mpi-linux-opteron/tmp/conv-mach-opt.h, conv-mach-opt.sh
>Performing 'make charm++ OPTS=' in mpi-linux-opteron/tmp
>rm -f .gdir
>(cd .. ; basename "`pwd`" | sed -e 's_at_-.*@@') > .gdir
>pwd
>/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp
>find . -type l -exec rm {} \;
>rm -rf QuickThreads
>rm -rf libs
>rm -rf ../bin ; mkdir ../bin
>rm -rf ../lib ; mkdir ../lib
>rm -rf ../lib_so ; mkdir ../lib_so; touch ../lib_so/.charmso
>rm -rf ../pgms
>rm -rf ../doc ; ln -s ../doc ../doc
>../../src/scripts/gatherflat ../../src/scripts .
>./gatherflat ../../src/conv-core .
>./gatherflat ../../src/conv-ldb .
>./gatherflat ../../src/conv-ccs .
>./gatherflat ../../src/conv-perf .
>./gatherflat ../../src/ck-core .
>./gatherflat ../../src/util .
>./gatherflat ../../src/ck-perf .
>./gatherflat ../../src/ck-ldb .
>./gatherflat ../../src/langs/simplemsg .
>./gatherflat ../../src/langs/pvmc .
>./gatherflat ../../src/langs/bluegene .
>./gatherflat ../../src/langs/f90charm .
>./gatherflat ../../src/xlat-i .
>./gatherflat ../../src/xlatcpm .
>./gathertree ../../src/QuickThreads QuickThreads
>./gathertree ../../src/libs libs
>./gathertree ../../src/arch/util .
>./gathertree ../../src/langs langs
>./gathertree ../../src/arch/common .
>./gathertree ../../src/arch/`cat .gdir` .
>./gatherflat ../../src/arch/`cat .vdir` .
>./gathertree ../../pgms ../pgms
>rm -f ../bin/dep.pl ; cp dep.pl ../bin/
>chmod +x charmc
>./system_ln ../tmp/charmc ../bin/
>./system_ln ../../java/bin charmjavabin
>./system_ln ../../java/bin ../bin/charmjavabin
>./system_ln charmjavabin/* ../bin/
>./system_ln ../java ..
>rm -f .gdir
>rm -rf ../include ; mkdir ../include
>./system_ln ../tmp/conv-*.*h ../include
>./system_ln ../tmp/cc-*.*h ../include
>if [ ! -f conv-common.h ] ; then ( touch conv-common.h ) ; fi
>touch dirs+sources
>make headerlinks
>make[1]: Entering directory
>`/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp'
>./configure
>checking machine name... mpi-linux-opteron
>set C++ compiler as: mpiCC -fPIC
>checking "whether C++ compiler works"... "ok"
>checking "whether C++ bool works"... "ok"
>checking "whether long long works"... "ok"
>checking "whether __int64 works"... "no"
>checking "whether long double works"... "ok"
>checking "whether C++ class explicit keyword works"... "ok"
>checking "whether C++ signed char and char differ"... "yes"
>checking "whether C++ *_casts<> work"... "ok"
>checking "whether templated member functions work"... "ok"
>checking "whether including STL <foo> works"... "ok"
>checking "whether the std:: names for STL work"... "ok"
>checking "whether namespaces work"... "ok"
>checking "whether typeinfo/typeid works"... "ok"
>checking "whether operator delete can be overloaded in same class"...
>"ok"
>checking "whether GCC x86 assembly works"... "yes"
>checking "whether GCC IA64 assembly works"... "no"
>checking "whether the poll() syscall exists"... "yes"
>checking "whether to use signal-safe system() "... "yes"
>checking "whether dlopen links without -ldl"... "no"
>checking "whether dlopen links with -ldl"... "yes"
>checking "whether getProcAddress works"... "no"
>checking "whether it has socklen_t"... "yes"
>checking "whether the mmap() syscall exists"... "yes"
>checking "whether mmap() accepts MAP_ANON"... "yes"
>checking "whether glibc backtrace works"... "yes"
>checking "whether it has zlib"... "yes"
>checking "whether has values.h "... "yes"
>checking "whether has elf.h "... "yes"
>checking "whether has stdint.h "... "yes"
>checking "whether PAPI exists"... "no"
>checking "whether it can build shared library"... "yes"
>checking subroutine name used by Fortran compiler... ALLCAPS
>configure: creating ./config.status
>config.status: creating conv-autoconfig.h
>../bin/charmc -host xi-main.C
>../bin/charmc -host xi-symbol.C
>../bin/charmc -host xi-grammar.tab.C
>../bin/charmc -host -I. -DYY_NEVER_INTERACTIVE xi-scan.C
>../bin/charmc -host xi-util.C
>../bin/charmc -host -c sdag-globals.C
>../bin/charmc -host -c CSdagConstruct.C
>../bin/charmc -host -c CEntry.C
>../bin/charmc -host -language c++ -cp ../bin/ -o charmxi xi-main.o
>xi-symbol.o xi-grammar.tab.o xi-scan.o xi-util.o sdag-globals.o
>CSdagConstruct.o CEntry.o
>../bin/charmc -intrinsic ckcallback.ci
>../bin/charmc -intrinsic ckmarshall.ci
>../bin/charmc -intrinsic ckarray.ci
>../bin/charmc -intrinsic cklocation.ci
>../bin/charmc -intrinsic ckreduction.ci
>../bin/charmc -intrinsic ckarrayreductionmgr.ci
>../bin/charmc -intrinsic tempo.ci
>../bin/charmc -intrinsic waitqd.ci
>../bin/charmc -intrinsic ckfutures.ci
>../bin/charmc -intrinsic ckcheckpoint.ci
>../bin/charmc -intrinsic ckmemcheckpoint.ci
>../bin/charmc -intrinsic LBDatabase.ci
>../bin/charmc -intrinsic CentralLB.ci
>../bin/charmc -intrinsic ComboCentLB.ci
>../bin/charmc -intrinsic NullLB.ci
>../bin/charmc -intrinsic RandCentLB.ci
>../bin/charmc -intrinsic RecBisectBfLB.ci
>../bin/charmc -intrinsic BaseLB.ci
>../bin/charmc -intrinsic MetisLB.ci
>../bin/charmc -intrinsic DummyLB.ci
>../bin/charmc -intrinsic RefineLB.ci
>../bin/charmc -intrinsic RefineCommLB.ci
>../bin/charmc -intrinsic OrbLB.ci
>../bin/charmc -intrinsic GreedyLB.ci
>../bin/charmc -intrinsic NborBaseLB.ci
>../bin/charmc -intrinsic NeighborLB.ci
>../bin/charmc -intrinsic NeighborCommLB.ci
>../bin/charmc -intrinsic WSLB.ci
>../bin/charmc -intrinsic GreedyRefLB.ci
>../bin/charmc -intrinsic RandRefLB.ci
>../bin/charmc -intrinsic GreedyCommLB.ci
>../bin/charmc -intrinsic Comm1LB.ci
>../bin/charmc -intrinsic EveryLB.ci
>../bin/charmc -intrinsic charisma.ci
>../bin/charmc -intrinsic trace-summary.ci
>../bin/charmc -intrinsic BlueGene.ci
>Soft-linking headers...
>touch headerlinks
>make[1]: Leaving directory
>`/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp'
>touch basics
>make charm-target
>make[1]: Entering directory
>`/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp'
>make headerlinks
>make[2]: Entering directory
>`/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp'
>make[2]: `headerlinks' is up to date.
>make[2]: Leaving directory
>`/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp'
>touch basics
>make QuickThreads/libqt.a
>make[2]: Entering directory
>`/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp'
>cd QuickThreads;./configure
>rm -f QuickThreads/libqt.a
>cd QuickThreads ; make qt OPTS=''
>make[3]: Entering directory
>`/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp/QuickThreads'
>rm -f qtmd.h
>../system_ln md/setjmp_d.h qtmd.h
>../../bin/charmc -seq -I. -c -o qt.o qt.c
>../../bin/charmc -seq -I. -c -o qtmds.o md/setjmp64.c
>md/setjmp64.c: In function `qt_args_1':
>md/setjmp64.c:53: warning: passing arg 1 of `longjmp' from incompatible
>pointer type
>md/setjmp64.c: In function `qt_block':
>md/setjmp64.c:88: warning: passing arg 1 of `longjmp' from incompatible
>pointer type
>md/setjmp64.c: In function `qt_abort':
>md/setjmp64.c:101: warning: passing arg 1 of `longjmp' from incompatible
>pointer type
>ar q libqt.a qt.o qtmds.o
>ar: creating libqt.a
>../../bin/charmc -seq -I. -shared -o libqt.so qt.o qtmds.o
>Warning: creating libqt.so
>make[3]: Leaving directory
>`/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp/QuickThreads'
>cp QuickThreads/libqt.a ../lib/libckqt.a
>(CHARMINC=.; . ./conv-config.sh; \
> test -d ../lib_so && \
> cp QuickThreads/libqt.$CMK_SHARED_SUF ../lib_so && \
> cp QuickThreads/libqt.$CMK_SHARED_SUF
>../lib_so/libckqt.$CMK_SHARED_SUF)
>make[2]: Leaving directory
>`/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp'
>make converse-target
>make[2]: Entering directory
>`/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp'
>../bin/charmc -c -I. convcore.c
>../bin/charmc -c -I. conv-conds.c
>../bin/charmc -c -I. queueing.c
>../bin/charmc -c -I. msgmgr.c
>../bin/charmc -c -I. cpm.c
>../bin/charmc -c -I. cpthreads.c
>cpthreads.c: In function `Cpthread_start_main':
>cpthreads.c:608: warning: cast to pointer from integer of different size
>../bin/charmc -c -I. futures.c
>../bin/charmc -c -I. cldb.c
>../bin/charmc -c -I. topology.C
>../bin/charmc -c -I. random.c
>../bin/charmc -c -I. debug-conv.c
>../bin/charmc -c -I. generate.c
>../bin/charmc -c -I. edgelist.c
>../bin/charmc -c -I. conv-ccs.c
>../bin/charmc -c -I. ccs-builtins.C
>../bin/charmc -c -I. traceCore.C
>../bin/charmc -c -I. traceCoreCommon.C
>../bin/charmc -c -I. converseProjections.C
>../bin/charmc -c -I. machineProjections.C
>../bin/charmc -c -I. quiescence.c
>../bin/charmc -c -I. isomalloc.c
>../bin/charmc -c -I. global-nop.c
>../bin/charmc -o ../lib/libconv-core.a convcore.o conv-conds.o
>queueing.o msgmgr.o cpm.o cpthreads.o futures.o cldb.o topology.o
>random.o debug-conv.o generate.o edgelist.o conv-ccs.o ccs-builtins.o
>traceCore.o traceCoreCommon.o converseProjections.o machineProjections.o
>quiescence.o isomalloc.o global-nop.o
>Warning: creating ../lib_so/libconv-core.so
>ar: creating ../lib/libconv-core.a
>../bin/charmc -o ../lib/libconv-cplus-y.a -DFOR_CPLUS=1 machine.c
>machine.c: In function `CmiAsyncBroadcastFn':
>machine.c:914: warning: cast to pointer from integer of different size
>machine.c: In function `CmiAsyncBroadcastAllFn':
>machine.c:957: warning: cast to pointer from integer of different size
>Warning: creating ../lib_so/libconv-cplus-y.so
>/usr/bin/ld: /usr/local/mpich_pg/lib/libmpich.a(isend.o): relocation
>R_X86_64_32 can not be used when making a shared object; recompile with
>-fPIC
>/usr/local/mpich_pg/lib/libmpich.a: could not read symbols: Bad value
>collect2: ld returned 1 exit status
>!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
>!! Failed to compile Charm++ shared library !!
>!! compile Charm++ again with -no-build-shared option !!
>!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
>Fatal Error by charmc in directory
>/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp
> Command mpicc -rdynamic -o ../lib_so/libconv-cplus-y.so
>-shared
>-L/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/lib_so
>machine.o returned error code 1
>charmc exiting...
>make[2]: *** [../lib/libconv-cplus-n.a] Error 1
>make[2]: Leaving directory
>`/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp'
>make[1]: *** [converse] Error 2
>make[1]: Leaving directory
>`/home/xqwang/namd/NAMD_2.5_Source/charm-5.8/mpi-linux-opteron/tmp'
>make: *** [charm++] Error 2
>-------------------------------------------------
>Charm++ NOT BUILT. Either cd into mpi-linux-opteron/tmp and try
>to resolve the problems yourself, visit
> http://charm.cs.uiuc.edu/
>for more information. Otherwise, email the developers at ppl_at_cs.uiuc.edu
>
>
>
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