From: Gan, Yong \(UMC-Student\) (yg8p2_at_mizzou.edu)
Date: Fri Feb 25 2005 - 12:55:09 CST
In the 2-5-spec_heat of NAMD Tutorial, we can get the energy of the protein by running the simulation with
ubq-get-energy.conf. Then, the DCD file is read. However, DCD file only has the coordinates. So, how does the simulation get the kinetic energy of the protein?
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