From: Blake Charlebois (bdc_at_mie.utoronto.ca)
Date: Fri Jun 17 2005 - 00:03:24 CDT
Are you trying to have the protein and lipid overlap in space? Or are you
trying to do something similar to what the membrane plugin does (package
The "measure center", "trans", and "move" commands may be of use (see VMD
manual). You may want to look at the membrane source code.
From: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] On Behalf
Of Swarna Patra
Sent: June 16, 2005 11:53 PM
Cc: Blake Charlebois
Subject: namd-l: set center
thanks for the reply. My question is I have a lipid and a protein. I want to
put the protein in the middle of lipid. so I want to set the center of
protein to center of lipid. if u understand it pl let me know, how I can do
that using tcl.
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