Re: Compiling on Linux-PPC970-Myrinet-MPI-xlC

From: Brian Bennion (brian_at_youkai.llnl.gov)
Date: Thu Mar 10 2005 - 15:59:33 CST

Thanks for the catch.

brian

On Thu, 10 Mar 2005, Gengbin Zheng wrote:

>
> Just a small correction:
> -DNO_STRSTREAM_H
>
> The latest NAMD in cvs repository should have this fixed.
>
> Gengbin
>
> Brian Bennion wrote:
>
> >Jordi,
> >
> >Quickly, just block strstream.h from being searched for, its not needed(?)
> >
> >ie in the arch file
> >Linux-PPC-MPI-xlC.arch
> >
> >add
> > -DNO_STREAM_H
> >
> >
> >On Thu, 10 Mar 2005, Jordi Camps wrote:
> >
> >
> >
> >>Hello everybody,
> >>
> >>I'm trying to compile NAMD on a cluster of PPC970 (G5) processors connected
> >>through a Myrinet and using a SuSe Linux 2.6.5 as operating system. The
> >>compiler set that I want to use is the IBM compilers: xlc, xlC, *_r...
> >>
> >>At this first stage I'm trying to compile only the basic NAMD: no fftw, no
> >>tcl, no plugins.
> >>
> >>I updated the charm++ to the last version (5.8) and it compiled OK and
> >>passed megatest tests with up to 16 processors (8 nodes).
> >>
> >>But when I try to compile the NAMD, I get some errors. The process followed
> >>to compile NAMD has been this:
> >> Update Make.charm
> >> Create files Linux-PPC-MPI-xlC.arch & Linux-PPC-MPI-xlC.base (.fftw,
> >>.tcl & .plugins coming soon ;-))
> >> ./config Linux-PPC-MPI-xlC
> >> cd Linux-PPC-MPI-xlC
> >> make
> >>
> >>But the first lines say this:
> >> mkdir inc
> >> mkdir obj
> >> mpicxx -w -DSOCKLEN_T=size_t
> >>-I.rootdir/charm-5.8/mpi-linux-gm2-xlc64/include -DCMK_OPTIMIZE=1 -Isrc
> >>-Iinc -DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-PPC-MPI-xlC-MPI\" -O3
> >>-o obj/common.o -c src/common.C
> >> "src/InfoStream.h", line 17.10: 1540-0836 (S) The #include file
> >><strstream.h> is not found.
> >> make: *** [obj/common.o] Error 1
> >>
> >>If I edit the InfoStream.h file and change <strstream.h> to <strstream> I
> >>get another bunch of messages like:
> >> "src/common.C", line 218.3: 1540-0256 (I) A parameter of type
> >>"std::basic_ostream<char,std::char_traits<char> > &" cannot be initialized
> >>with an expression of type "infostream".
> >> "src/InfoStream.h", line 67.13: 1540-1283 (I) "operator<<(infostream
> >>&, const Vector &)" is not a viable candidate."
> >>
> >>Someone has compiled NAMD with xlC? Someone can help me?
> >>
> >>Thanks in advance.
> >>
> >>--
> >>
> >>Jordi Camps Puchades
> >>
> >>Instituto Nacional de Bioinformatica (INB) Nodo Computacional GNHC-2
> >>UPC-CIRI
> >>c/. Jordi Girona 1-3
> >>Modul C6-E201 Tel. : 934 011 650
> >>E-08034 Barcelona Fax : 934 017 014
> >>Catalunya (Spain) e-mail: jcamps_at_lsi.upc.edu
> >>
> >>
> >>
> >
> >************************************************
> > Brian Bennion, Ph.D.
> > Bioscience Directorate
> > Lawrence Livermore National Laboratory
> > P.O. Box 808, L-448 bennion1_at_llnl.gov
> > 7000 East Avenue phone: (925) 422-5722
> > Livermore, CA 94550 fax: (925) 424-6605
> >************************************************
> >
> >
>

************************************************
  Brian Bennion, Ph.D.
  Bioscience Directorate
  Lawrence Livermore National Laboratory
  P.O. Box 808, L-448 bennion1_at_llnl.gov
  7000 East Avenue phone: (925) 422-5722
  Livermore, CA 94550 fax: (925) 424-6605
************************************************

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