Re: Complie NAMD on Suse Linux

From: Jason Lee (hellocunning_at_hotmail.com)
Date: Wed Feb 09 2005 - 16:51:28 CST

Hello, Gengbin:

Thank you very much for your reply. However I didn't find Makefile in the
NAMD/arch/. Actually this file, Makefile, is in the directory,
/NAMD_Source_2.5, which doesn't have the -static term. I find the -static
term in the file /NAMD_2.5_Source/arch/Linux-i686-g++.arch. The -static is
deleted in the following compilation. The error message is as follows.

Could you explain it a little bit? Thank a lot.

mkdir inc
mkdir obj
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/common.o -c src/common.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/common.C:11:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/dcdlib.o -c src/dcdlib.C
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/erf.o -c src/erf.C
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/main.ci
mv main.def.h inc
mv main.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/WorkDistrib.ci
mv WorkDistrib.def.h inc
mv WorkDistrib.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/ReductionMgr.ci
mv ReductionMgr.def.h inc
mv ReductionMgr.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/PatchMgr.ci
mv PatchMgr.def.h inc
mv PatchMgr.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/ProxyMgr.ci
mv ProxyMgr.def.h inc
mv ProxyMgr.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/Node.ci
mv Node.def.h inc
mv Node.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/LdbCoordinator.ci
mv LdbCoordinator.def.h inc
mv LdbCoordinator.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/NamdCentLB.ci
mv NamdCentLB.def.h inc
mv NamdCentLB.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/NamdNborLB.ci
mv NamdNborLB.def.h inc
mv NamdNborLB.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/ComputeMgr.ci
mv ComputeMgr.def.h inc
mv ComputeMgr.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/ComputePmeMgr.ci
mv ComputePmeMgr.def.h inc
mv ComputePmeMgr.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/ComputeExtMgr.ci
mv ComputeExtMgr.def.h inc
mv ComputeExtMgr.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/CollectionMgr.ci
mv CollectionMgr.def.h inc
mv CollectionMgr.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/CollectionMaster.ci
mv CollectionMaster.def.h inc
mv CollectionMaster.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/BroadcastMgr.ci
mv BroadcastMgr.def.h inc
mv BroadcastMgr.decl.h inc
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/bin/charmc
src/Sync.ci
mv Sync.def.h inc
mv Sync.decl.h inc
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/main.o -c src/main.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/main.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/mainfunc.o -c src/mainfunc.C
In file included from /usr/include/g++/backward/strstream:51,
                 from src/InfoStream.h:20,
                 from src/mainfunc.C:11:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/memusage.o -c src/memusage.C
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/strlib.o -c src/strlib.C
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/AlgSeven.o -c src/AlgSeven.C
In file included from /usr/include/g++/backward/strstream:51,
                 from src/InfoStream.h:20,
                 from src/AlgSeven.C:8:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/AlgRecBisection.o -c
src/AlgRecBisection.C
In file included from /usr/include/g++/backward/strstream:51,
                 from src/InfoStream.h:20,
                 from src/AlgRecBisection.C:8:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/AlgNbor.o -c src/AlgNbor.C
In file included from /usr/include/g++/backward/strstream:51,
                 from src/InfoStream.h:20,
                 from src/AlgNbor.C:8:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/AtomMap.o -c src/AtomMap.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/AtomMap.C:11:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/BackEnd.o -c src/BackEnd.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/ProcessorPrivate.h:7,
                 from src/BackEnd.C:10:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/BroadcastMgr.o -c src/BroadcastMgr.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/BroadcastMgr.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/BroadcastClient.o -c
src/BroadcastClient.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/BroadcastClient.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/CollectionMaster.o -c
src/CollectionMaster.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/CollectionMaster.C:10:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/CollectionMgr.o -c src/CollectionMgr.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/CollectionMgr.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/Communicate.o -c src/Communicate.C
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/Compute.o -c src/Compute.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/Compute.C:14:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeAngles.o -c src/ComputeAngles.C
In file included from /usr/include/g++/backward/new.h:33,
                 from src/ResizeArrayRaw.h:19,
                 from src/ResizeArray.h:19,
                 from src/NamdTypes.h:12,
                 from src/ComputeHomeTuples.h:10,
                 from src/ComputeAngles.h:10,
                 from src/ComputeAngles.C:14:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeBonds.o -c src/ComputeBonds.C
In file included from /usr/include/g++/backward/new.h:33,
                 from src/ResizeArrayRaw.h:19,
                 from src/ResizeArray.h:19,
                 from src/NamdTypes.h:12,
                 from src/ComputeBonds.h:11,
                 from src/ComputeBonds.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeConsForce.o -c
src/ComputeConsForce.C
In file included from /usr/include/g++/backward/new.h:33,
                 from src/ResizeArrayRaw.h:19,
                 from src/ResizeArray.h:19,
                 from src/NamdTypes.h:12,
                 from src/Lattice.h:10,
                 from src/SimParameters.h:14,
                 from src/ComputeConsForce.C:2:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeConsForceMsgs.o -c
src/ComputeConsForceMsgs.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/ComputeConsForceMsgs.h:10,
                 from src/ComputeConsForceMsgs.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeCylindricalBC.o -c
src/ComputeCylindricalBC.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/Compute.h:17,
                 from src/ComputePatch.h:14,
                 from src/ComputeCylindricalBC.h:10,
                 from src/ComputeCylindricalBC.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeDihedrals.o -c
src/ComputeDihedrals.C
In file included from /usr/include/g++/backward/new.h:33,
                 from src/ResizeArrayRaw.h:19,
                 from src/ResizeArray.h:19,
                 from src/NamdTypes.h:12,
                 from src/ComputeHomeTuples.h:10,
                 from src/ComputeDihedrals.h:10,
                 from src/ComputeDihedrals.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeDPME.o -c src/ComputeDPME.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/Node.h:16,
                 from src/ComputeDPME.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
In file included from src/ComputeDPME.C:13:
src/ComputeNonbondedUtil.h: In member function `plint*
Pairlists::newlist(int)
   ':
src/ComputeNonbondedUtil.h:34: warning: converting to `int' from `double'
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeDPMEMsgs.o -c
src/ComputeDPMEMsgs.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/ComputeDPMEMsgs.h:10,
                 from src/ComputeDPMEMsgs.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeDPMTA.o -c src/ComputeDPMTA.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/Node.h:16,
                 from src/ComputeDPMTA.C:8:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
In file included from src/ComputeDPMTA.C:10:
src/ComputeNonbondedUtil.h: In member function `plint*
Pairlists::newlist(int)
   ':
src/ComputeNonbondedUtil.h:34: warning: converting to `int' from `double'
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeEField.o -c src/ComputeEField.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/Compute.h:17,
                 from src/ComputeHomePatch.h:14,
                 from src/ComputeEField.h:10,
                 from src/ComputeEField.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeExt.o -c src/ComputeExt.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/Node.h:16,
                 from src/ComputeExt.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeFullDirect.o -c
src/ComputeFullDirect.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/Node.h:16,
                 from src/ComputeFullDirect.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
In file included from src/ComputeFullDirect.C:12:
src/ComputeNonbondedUtil.h: In member function `plint*
Pairlists::newlist(int)
   ':
src/ComputeNonbondedUtil.h:34: warning: converting to `int' from `double'
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeHomePatch.o -c
src/ComputeHomePatch.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/ComputeHomePatch.C:11:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeHomePatches.o -c
src/ComputeHomePatches.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/Node.h:16,
                 from src/ComputeHomePatches.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeImpropers.o -c
src/ComputeImpropers.C
In file included from /usr/include/g++/backward/new.h:33,
                 from src/ResizeArrayRaw.h:19,
                 from src/ResizeArray.h:19,
                 from src/NamdTypes.h:12,
                 from src/ComputeHomeTuples.h:10,
                 from src/ComputeImpropers.h:10,
                 from src/ComputeImpropers.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeGlobal.o -c src/ComputeGlobal.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/Node.h:16,
                 from src/ComputeGlobal.C:11:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeGlobalMsgs.o -c
src/ComputeGlobalMsgs.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/ComputeGlobalMsgs.h:10,
                 from src/ComputeGlobalMsgs.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeMap.o -c src/ComputeMap.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/ComputeMap.C:10:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeMgr.o -c src/ComputeMgr.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/ComputeMgr.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
In file included from src/ComputeMgr.C:27:
src/ComputeNonbondedUtil.h: In member function `plint*
Pairlists::newlist(int)
   ':
src/ComputeNonbondedUtil.h:34: warning: converting to `int' from `double'
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeNonbondedSelf.o -c
src/ComputeNonbondedSelf.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/Compute.h:17,
                 from src/ComputePatch.h:14,
                 from src/ComputeNonbondedSelf.h:10,
                 from src/ComputeNonbondedSelf.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
In file included from src/ComputeNonbondedSelf.h:11,
                 from src/ComputeNonbondedSelf.C:7:
src/ComputeNonbondedUtil.h: In member function `plint*
Pairlists::newlist(int)
   ':
src/ComputeNonbondedUtil.h:34: warning: converting to `int' from `double'
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeNonbondedPair.o -c
src/ComputeNonbondedPair.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/Compute.h:17,
                 from src/ComputePatchPair.h:15,
                 from src/ComputeNonbondedPair.h:10,
                 from src/ComputeNonbondedPair.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
In file included from src/ComputeNonbondedPair.h:11,
                 from src/ComputeNonbondedPair.C:7:
src/ComputeNonbondedUtil.h: In member function `plint*
Pairlists::newlist(int)
   ':
src/ComputeNonbondedUtil.h:34: warning: converting to `int' from `double'
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeNonbondedUtil.o -c
src/ComputeNonbondedUtil.C
In file included from /usr/include/g++/backward/new.h:33,
                 from src/ResizeArrayRaw.h:19,
                 from src/ResizeArray.h:19,
                 from src/NamdTypes.h:12,
                 from src/ComputeNonbondedUtil.h:14,
                 from src/ComputeNonbondedUtil.C:17:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
In file included from src/ComputeNonbondedUtil.C:17:
src/ComputeNonbondedUtil.h: In member function `plint*
Pairlists::newlist(int)
   ':
src/ComputeNonbondedUtil.h:34: warning: converting to `int' from `double'
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeNonbondedStd.o -c
src/ComputeNonbondedStd.C
In file included from /usr/include/g++/backward/new.h:33,
                 from src/ResizeArrayRaw.h:19,
                 from src/ResizeArray.h:19,
                 from src/NamdTypes.h:12,
                 from src/ComputeNonbondedUtil.h:14,
                 from src/ComputeNonbondedInl.h:18,
                 from src/ComputeNonbondedStd.C:11:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
In file included from src/ComputeNonbondedInl.h:18,
                 from src/ComputeNonbondedStd.C:11:
src/ComputeNonbondedUtil.h: In member function `plint*
Pairlists::newlist(int)
   ':
src/ComputeNonbondedUtil.h:34: warning: converting to `int' from `double'
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeNonbondedFEP.o -c
src/ComputeNonbondedFEP.C
In file included from /usr/include/g++/backward/new.h:33,
                 from src/ResizeArrayRaw.h:19,
                 from src/ResizeArray.h:19,
                 from src/NamdTypes.h:12,
                 from src/ComputeNonbondedUtil.h:14,
                 from src/ComputeNonbondedInl.h:18,
                 from src/ComputeNonbondedFEP.C:11:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
In file included from src/ComputeNonbondedInl.h:18,
                 from src/ComputeNonbondedFEP.C:11:
src/ComputeNonbondedUtil.h: In member function `plint*
Pairlists::newlist(int)
   ':
src/ComputeNonbondedUtil.h:34: warning: converting to `int' from `double'
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputeNonbondedLES.o -c
src/ComputeNonbondedLES.C
In file included from /usr/include/g++/backward/new.h:33,
                 from src/ResizeArrayRaw.h:19,
                 from src/ResizeArray.h:19,
                 from src/NamdTypes.h:12,
                 from src/ComputeNonbondedUtil.h:14,
                 from src/ComputeNonbondedInl.h:18,
                 from src/ComputeNonbondedLES.C:11:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
In file included from src/ComputeNonbondedInl.h:18,
                 from src/ComputeNonbondedLES.C:11:
src/ComputeNonbondedUtil.h: In member function `plint*
Pairlists::newlist(int)
   ':
src/ComputeNonbondedUtil.h:34: warning: converting to `int' from `double'
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputePatch.o -c src/ComputePatch.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/ComputePatch.C:11:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputePatchPair.o -c
src/ComputePatchPair.C
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/ComputePatchPair.C:7:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
-I/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/LINUX/molfile
-I/home/l0l6571/NAMD_download/Source_code/plugins/LINUX/include
-I/home/l0l6571/plugins/LINUX -I/home/l0l6571/plugins/LINUX/molfile
-I/home/l0l6571/plugins/include -DNAMD_PLUGINS -I/usr/include//include
-I/home/l0l6571/tcl-linux/include -DNAMD_TCL -DUSE_NON_CONST
-I/usr/include//include -I/home/l0l6571/fftw-linux/include -DNAMD_FFTW
-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-i686\" -O3
-march=pentiumpro -ffast-math -o obj/ComputePme.o -c src/ComputePme.C
src/ComputePme.C:8:19: sfftw.h: No such file or directory
src/ComputePme.C:9:20: srfftw.h: No such file or directory
In file included from /usr/include/g++/backward/new.h:33,
                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/init.h:5,

                 from
/home/l0l6571/NAMD_download/Source_code/NAMD_2.5_Source/charm/net-linux/include/charm++.h:25,

                 from src/Node.h:16,
                 from src/ComputePme.C:12:
/usr/include/g++/backward/backward_warning.h:32:2: warning: #warning This
file includes at least one deprecated or antiquated header. Please consider
using one of the 32 headers found in section 17.4.1.2 of the C++ standard.
Examples include substituting the <X> header for the <X.h> header for C++
includes, or <sstream> instead of the deprecated header <strstream.h>. To
disable this warning use -Wno-deprecated.
In file included from src/ComputePme.C:20:
src/ComputeNonbondedUtil.h: In member function `plint*
Pairlists::newlist(int)
   ':
src/ComputeNonbondedUtil.h:34: warning: converting to `int' from `double'
src/ComputePme.C: At global scope:
src/ComputePme.C:213: error: syntax error before `,' token
src/ComputePme.C:214: error: syntax error before `,' token
src/ComputePme.C:215: error: syntax error before `*' token
src/ComputePme.C: In constructor `ComputePmeMgr::ComputePmeMgr()':
src/ComputePme.C:289: error: `work' undeclared (first use this function)
src/ComputePme.C:289: error: (Each undeclared identifier is reported only
once
   for each function it appears in.)
src/ComputePme.C: In member function `void
ComputePmeMgr::initialize(CkQdMsg*)
   ':
src/ComputePme.C:548: error: syntax error before `[' token
src/ComputePme.C:552: error: `forward_plan_yz' undeclared (first use this
   function)
src/ComputePme.C:552: error: `FFTW_REAL_TO_COMPLEX' undeclared (first use
this
   function)
src/ComputePme.C:553: error: `FFTW_ESTIMATE' undeclared (first use this
   function)
src/ComputePme.C:553: error: `FFTW_MEASURE' undeclared (first use this
   function)
src/ComputePme.C:554: error: `FFTW_IN_PLACE' undeclared (first use this
   function)
src/ComputePme.C:554: error: `FFTW_USE_WISDOM' undeclared (first use this
   function)
src/ComputePme.C:554: error: `rfftwnd_create_plan_specific' undeclared
(first
   use this function)
src/ComputePme.C:558: error: `forward_plan_x' undeclared (first use this
   function)
src/ComputePme.C:560: error: `fftw_complex' undeclared (first use this
   function)
src/ComputePme.C:560: error: syntax error before `)' token
src/ComputePme.C:565: error: `backward_plan_x' undeclared (first use this
   function)
src/ComputePme.C:565: error: `FFTW_COMPLEX_TO_REAL' undeclared (first use
this
   function)
src/ComputePme.C:567: error: syntax error before `)' token
src/ComputePme.C:572: error: `backward_plan_yz' undeclared (first use this
   function)
src/ComputePme.C: In member function `void ComputePmeMgr::gridCalc1()':
src/ComputePme.C:662: error: `rfftwnd_real_to_complex' undeclared (first
use
   this function)
src/ComputePme.C: In member function `void ComputePmeMgr::gridCalc2()':
src/ComputePme.C:771: error: syntax error before `)' token
src/ComputePme.C:772: error: `fftw' undeclared (first use this function)
src/ComputePme.C:783: error: syntax error before `)' token
src/ComputePme.C: In member function `void ComputePmeMgr::gridCalc3()':
src/ComputePme.C:889: error: syntax error before `)' token
src/ComputePme.C:890: error: `rfftwnd_complex_to_real' undeclared (first
use
   this function)
make: *** [obj/ComputePme.o] Error 1

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This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:39:09 CST