Re: Move molecule

From: Uday Chippada (chippada_at_eden.rutgers.edu)
Date: Thu Nov 18 2004 - 14:07:50 CST

Hey Edward,

That worked like magic. Thanx a lot :)

uday
----- Original Message -----
From: "Edward Patrick Obrien" <edobrien_at_Glue.umd.edu>
To: "Uday Chippada" <chippada_at_eden.rutgers.edu>
Cc: <namd-l_at_ks.uiuc.edu>
Sent: Thursday, November 18, 2004 1:39 PM
Subject: Re: namd-l: Move molecule

>
> Hi Uday,
>
> >set molecule [atomselect top "protein"]
> > $molecule moveby {dx dy dz}
>
> where dx dy and dz are the x y z displacements from original location.
>
> Do this on the VMD command line with the protein loaded.
> Ed
>
> On Thu, 18 Nov 2004, Uday Chippada wrote:
>
> > Hi all,
> >
> > I have seen the mouse mode commands to move a molecule, thus changing
its coordinates.
> > 5 mouse mode 4 6 move atom
> > 6 mouse mode 4 7 move residue
> > 7 mouse mode 4 8 move fragment
> > 8 mouse mode 4 9 move molecule
> > 9 mouse mode 4 13 move highlighted rep
> >
> >
> > But using these commands, I cannot specify a particular displacement. I
want to know, if there is any other text command using which I can move the
molecule to a new loaction (if possible copy the present molecule and paste
it at a new location). But I want to give the amount by which I want to move
it .. like "move rep by 15 A in y-direction". Something similar to that.
> >
> > Any help would be appreciated,
> >
> > Thanx
> >
> > Uday
>
>

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:39:00 CST