Re: NAMD on Linux cluster with Myrinet

From: Brian Bennion (brian_at_youkai.llnl.gov)
Date: Mon Oct 11 2004 - 15:53:14 CDT

Ah now we are getting somewhere, can you do a stack trace on the core
file that was dumped? Which I guess means that you compiled with debug
symbols right... sorry should have asked for you to do that first.

Gengbin, do you have any suggestions?

Brian

On Mon, 11 Oct 2004, Alberto Santana wrote:

> Hello Brian,
> I did run the megatest and this is what I got
>
> node2:.../megatest> charmrun +p4 ./pgm
> Charm++: scheduler running in netpoll mode.
> test 0: initiated [groupring (milind)]
> [0] Assertion "CkMyPe()!=0" failed in file init.C line 389.
> ------------- Processor 0 Exiting: Called CmiAbort ------------
> Reason:
> [1] Assertion "getMsgtype()==3 || getMsgtype()==5 || getMsgtype()==13 ||
> getMsgtype()==14" failed in file envelope.h line 209.
> ------------- Processor 1 Exiting: Called CmiAbort ------------
> Reason:
> req_handle_abort called
> Fatal error on PE 1>
>
> I need to figure this out. I don't like the idea of having a Myrinet that
> NAMD can't use
>
> Alberto
> --
> Best wishes,
> Alberto
> +-------------------------------------------------------------------+
> Alberto Santana, PhD
> Department of Chemistry
> University of Puerto Rico - Mayaguez
> P.O. Box 9019
> Mayaguez PR 00681-9019
> Phone: (787) 832-4040 x3760
> http://www.uprm.edu/~asantana
> +-------------------------------------------------------------------+
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>

*****************************************************************
**Brian Bennion, Ph.D. **
**Computational and Systems Biology Division **
**Biology and Biotechnology Research Program **
**Lawrence Livermore National Laboratory **
**P.O. Box 808, L-448 bennion1_at_llnl.gov **
**7000 East Avenue phone: (925) 422-5722 **
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