From: Giovanni (giovanni.bellesia_at_ucd.ie)
Date: Tue Feb 24 2004 - 13:45:44 CST
I just untar binary files on one of a 15 machines' (30 cpus) Linux cluster.
NAMD is working on simulations within the local machine using 1 and 2 cpus.
i.e. it is working with command lines
namd2 ubq_ws_eq.conf > ubq_ws_eqC.log
charmrun ~/bin/namd2 ++local +p2 ++verbose ubq_ws_eq.conf > ubq_ws_eqC.log
I have charmrun and namd2 files, both in my /home/myname/bin directory.
The nodelist file is in the current working directory;
here's the content
I am running from sys15 with the following command
charmrun ~/bin/namd2 +p6 ++verbose ubq_ws_eq.conf > ubq_ws_eqC.log
I have rsh access without passwd to all the listed machines
and this is what I have from the screen:
Charmrun> charmrun started...
Charmrun> using ./nodelist as nodesfile
Charmrun> rsh (sys15:0d) started
Charmrun> rsh (sys13:1d) started
Charmrun> rsh (sys11:2d) started
Charmrun> rsh (sys15:3d) started
Charmrun> rsh (sys13:4d) started
Charmrun> rsh (sys11:5d) started
Charmrun> node programs all started
Charmrun> error 2 attaching to node:
Timeout waiting for node-program to connect
I am sure I am missing something really simple ... could you help me ?
Thanks in advance
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:38:27 CST