RE: display all frames simultaneously

From: Luis Gracia (lgraval_at_gmail.com)
Date: Fri Apr 17 2009 - 00:35:29 CDT

Sure, in vmd go to each representation an enter the range of frames in the trajectory tab.

Best,
Luis

-----Original Message-----
From: Samuel Coulbourn Flores 花山 <scflores_at_stanford.edu>
Sent: Thursday, April 16, 2009 10:35 PM
To: <mishacat_at_udm.ru> <mishacat_at_udm.ru>
Cc: namd-l_at_ks.uiuc.edu; VMD Mailing List <vmd-l_at_ks.uiuc.edu>; Samuel Flores <scflores_at_stanford.edu>
Subject: namd-l: display all frames simultaneously

Hi Guys,

I wonder -- is it possible to display all frames of an ensemble, instead of "playing" them as a movie?  I have each conformation separated with MODEL and ENDMDL tags in a PDB formatted file.  I want to generate a picture of the conformational variability of my molecule.  Please let me know how to do this if it is possible.

Many thanks

Sam

Samuel Coulbourn Flores, PhD
Altman Lab
Department of BioEngineering
Stanford University
samuel.flores_at_aya.yale.edu
650.644.8416

花山
科学者
生物工学部
スタンフォ一ド大学
スタンフォ一ド、カリフォルニア、米国


















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