Re: topology and parameter file for FAD

From: Schreiner Eduard (eschrein_at_ks.uiuc.edu)
Date: Sun Mar 01 2009 - 01:52:09 CST

I only know one paper, in which they seem to have used CHARMM
parameters for FAD:

J Biol Chem, Vol. 273, Issue 33, 21031-21039, August 14, 1998
Interdomain binding of NADPH in p-Hydroxybenzoate Hydroxylase as
Suggested by Kinetic, Crystallographic and Modeling Studies of
Histidine 162 and Arginine 269 Variants
Michel H. M. Eppink

, Herman A. Schreuder§, and Willem J. H. van Berkel


link:
http://www.jbc.org/cgi/content/full/273/33/21031

eddi

On Feb 28, 2009, at 8:40 AM, Demet Akten wrote:

> Dear all,
>
> I have a protein system with FAD cofactor. Has anyone already
> generated parameter and topology files for FAD molecule? Thanks in
> advance.
>
> Demet
>
>
>
>

=====================================================
Eduard Schreiner
Theoretical and Computational Biophysics Group
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801
Phone: 217-244-4361
Fax: 217-244-6078
http://www.ks.uiuc.edu/~eschrein/
=============================================

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