I: Running Charm++ over MPI does not work

From: andy.mastellone_at_alice.it
Date: Thu Jan 22 2009 - 08:23:58 CST

Hi Mahesh,

perhaps do you mean the precompiled version that one downloads from Charm++ web site ? In the case, I would need a mpi-linux-ia64 on intel compilers (ifort and ecc) that I do not see on their site...

Thank you for reply...

Andrea

-----Messaggio originale-----
Da: mahesh kulharia [mailto:kulharia_at_googlemail.com]
Inviato: gio 22/01/2009 15.14
A: andy.mastellone_at_alice.it
Oggetto: Re: namd-l: Running Charm++ over MPI does not work
 
Run binaries. I had the same problems and binaries are running properly for
me.

regards

2009/1/22 <andy.mastellone_at_alice.it>

> Hi,
>
> before installing NAMD I have some problems related to running charm test
> routines when dealing with MPI. Both on a single host (ia32 with an OpenMPI
> implementation) and a multicore host (ia64 with an NECmpi environment) I
> built successfully charm++ including the MPI files issuing
>
> ./build LIBS mpi-linux-ia32(64) icc(ecc) ifort -O2 -DCMK_OPTIMIZE
>
> (I have Intel compilers)
> but, when I give a make in
>
> tests/charm++/simplearrayhello
>
> it complains about
>
> andy charm-6.0/tests/charm++/simplearrayhello 114 % make
> ./../../bin/charmc -language charm++ -o hello hello.o
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function
> `CmiNotifyIdle':
> machine.c:(.text+0x202): undefined reference to `MPI_Recv'
> machine.c:(.text+0x232): undefined reference to `MPI_Get_count'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function
> `CmiAsyncSendFn_':
> machine.c:(.text+0xe82): undefined reference to `MPI_Isend'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function
> `CmiAsyncBroadcastAllFn':
> machine.c:(.text+0x11c2): undefined reference to `MPI_Test'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function
> `CmiAsyncBroadcastFn':
> machine.c:(.text+0x1622): undefined reference to `MPI_Test'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function
> `CmiReleaseSentMessages':
> machine.c:(.text+0x2702): undefined reference to `MPI_Test'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `PumpMsgs':
> machine.c:(.text+0x28f2): undefined reference to `MPI_Iprobe'
> machine.c:(.text+0x2942): undefined reference to `MPI_Get_count'
> machine.c:(.text+0x2992): undefined reference to `MPI_Recv'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function
> `CmiAsyncMsgSent':
> machine.c:(.text+0x2e52): undefined reference to `MPI_Test'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function
> `CmiBarrierZero':
> machine.c:(.text+0x3182): undefined reference to `MPI_Recv'
> machine.c:(.text+0x3232): undefined reference to `MPI_Send'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiCpuTimer':
> machine.c:(.text+0x32d2): undefined reference to `MPI_Wtime'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function
> `CmiWallTimer':
> machine.c:(.text+0x3352): undefined reference to `MPI_Wtime'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiTimer':
> machine.c:(.text+0x33d2): undefined reference to `MPI_Wtime'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiBarrier':
> machine.c:(.text+0x34a2): undefined reference to `MPI_Barrier'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function
> `CmiTimerIsSynchronized':
> machine.c:(.text+0x3582): undefined reference to `MPI_Attr_get'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function
> `CmiTimerInit':
> machine.c:(.text+0x3812): undefined reference to `MPI_Wtime'
> machine.c:(.text+0x3852): undefined reference to `MPI_Allreduce'
> machine.c:(.text+0x38c2): undefined reference to `MPI_Wtime'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function
> `ConverseInit':
> machine.c:(.text+0x3962): undefined reference to `MPI_Init_thread'
> machine.c:(.text+0x3992): undefined reference to `MPI_Comm_size'
> machine.c:(.text+0x39c2): undefined reference to `MPI_Comm_rank'
> machine.c:(.text+0x39e2): undefined reference to `MPI_Get_version'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function
> `ConverseExit':
> machine.c:(.text+0x44e2): undefined reference to `MPI_Test'
> machine.c:(.text+0x4532): undefined reference to `MPI_Barrier'
> machine.c:(.text+0x4592): undefined reference to `MPI_Finalize'
> machine.c:(.text+0x46a2): undefined reference to `MPI_Test'
> ./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiAbort':
> machine.c:(.text+0x47f2): undefined reference to `MPI_Abort'
> Fatal Error by charmc in directory
> /u1/maad559/charm-6.0/tests/charm++/simplearrayhello
> Command ecpc -rdynamic -o hello -L../../../bin/../lib
> -I../../../bin/../include ../../../bin/../lib/libldb-rand.o hello.o
> moduleinit4822.o ../../../bin/../lib/libmemory-default.o
> ./../../bin/../lib/libthreads-default.o -lck -lconv-cplus-y -lconv-core
> -lconv-util -lckqt -llammpio -llammpi++ -llamf77mpi -lmpi -llam -laio -laio
> -lutil -ldl -lm returned error code 1
> charmc exiting...
> make: *** [hello] Error 1
>
> Conversely, the UDP version (net-linux-....) is fine in all tests in both
> the machines.
>
> A suggest/help would be very helpful at this stage. Please don't esitate to
> ask me further details if required. Thank you...
>

-- 
Kulharia
Department of youknowwhat
University of youknowwhere

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