running namd with condor

From: emir mahmut bahsi (
Date: Mon May 19 2008 - 15:42:38 CDT

**I am trying to run namd vi Condor-G.
**However, whatever I try it does not except that argument as the file name.
It always gives me the following error:

*------------- Processor 0 Exiting: Called CmiAbort ------------*
*Reason: FATAL ERROR: No simulation config file specified on command line.*

My condor submit file is following:
universe = globus
globusscheduler = *<site>*/jobmanager-pbs
executable = *<directory path for namd>*/namd2
arguments = "*<directory path for config file>*/min1.conf"
environment = "CHARMRUN=*<directory path for charmrun>*/charmrun"
remote_initialdir = /.../../.../sim/0000
should_transfer_files = YES
when_to_transfer_output = ON_EXIT
transfer_executable = false
error = tom_condor_old.error
output = tom_condor_old.output
log = tom_condor_old.log
notification = never
globusrsl = (project=<*allocation*>)(jobType=mpi)(count=04)(queue =
checkpt)(arguments=*<directory path for config file>*/min1.conf)

Since I did not know whether I have to give the argument name as the
argument in condor-dagman or argument as a value in globusrsl; I wrote in
both places (as you can see above).

I am trying to solve that problem for a week but I could not. Has anybody
tried that before? I really appreciate any help.


Emir Mahmut Bahsi
Research assistant
Dept of Computer Science at LSU
Room 231, Johnston Hall
Louisiana State University
Baton Rouge, LA 70803

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 05:21:03 CST