energy minimization help

From: sripad chandan (sripadchandan_at_gmail.com)
Date: Sat Feb 09 2008 - 09:03:50 CST

hii,
I am new to NAMD, but know how to work on it.
I have done homology modelling of a protein.
now i want to do energy minimization with NAMD.

1) How can i do it? is there any protocol available?

2) does the pdb file of the protein changes after doing the simulation with
it?

thanking you.
chandan

-- 
Sripad Chandan Patnaik
M.Tech.
National Institute of Technology, Rourkela
+91-9861668977

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 05:20:53 CST