Re: Using NAMD DCD in CHARMM

From: Himanshu Khandelia (hkhandel_at_memphys.sdu.dk)
Date: Fri Nov 16 2007 - 01:19:21 CST

A NAMD DCD is directly readable in CHARMM, although you will have to
rebuild your psf in charmm, because the NAMD psf format is not directly
recognized.

----------------------------
Himanshu Khandelia, PhD (Chemical Engineering),
Research Assistant Professor (Postdoc),
MEMPHYS, Center for BioMembrane Physics: www.memphys.sdu.dk
University of Southern Denmark (SDU)
Campusvej 55, Odense M 5230, Denmark
Phone: +45 6550 3510, +45 2398 7972
Fax: +45 6550 4048
email: hkhandel_at_memphys.sdu.dk,
hkhandelia_at_gmail.com
WWW: www.memphys.sdu.dk/~hkhandel
-----------------------------

On Thu, 15 Nov 2007, Peter Freddolino wrote:

> Hi Ahlam,
> you may want to try the tools provided at
> http://www.ks.uiuc.edu/Development/MDTools/flipdcd/ if you're having
> trouble with this.
> Best,
> Peter
>
> Ahlam Al-Rawi wrote:
> > Dear All,
> >
> > I need to know if you can help me to read my out put files "DCD
> > "produced by NAMD to do used for analysis using CHARMM program.
> > Thanks
> > Ahlam
> >
> >
>
>

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