Re: Installing NAMD 2.6 on SMP machine... charm++ install errors

From: Arun Krishnan (krishnan_at_ttck.keio.ac.jp)
Date: Fri Jul 06 2007 - 01:45:46 CDT

I tried again using simply mpi-linux, and this time, it progressed further
but I ran up against the following error:

Warning: creating ../../../../lib_so/libmoduleCkMulticast.so
ar: creating ../../../../lib/libmoduleCkMulticast.a
/bin/cp CkMulticast.decl.h ../../../../include
/bin/cp CkMulticast.def.h ../../../../include
/bin/cp ckmulticast.h ../../../../include
gmake[2]: Leaving directory `/home/arun/NAMD_2.6_Source/charm-5.9
/mpi-linux/tmp/libs/ck-libs/multicast'
../bin/charmc -c -I. ComlibManager.C
MsgPacker.h:86: error: extra qualification 'MsgPacker::' on member
'MsgPacker'
mpiCC: No such file or directory
Fatal Error by charmc in directory /home/arun/NAMD_2.6_Source/charm-5.9
/mpi-linux/tmp
   Command mpiCC -I../bin/../include -D__CHARMC__=1 -I. -c ComlibManager.C-o
ComlibManager.o returned error code 1
charmc exiting...
gmake[1]: *** [ComlibManager.o] Error 1
gmake[1]: Leaving directory `/home/arun/NAMD_2.6_Source/charm-5.9
/mpi-linux/tmp'
gmake: *** [charm++] Error 2
-------------------------------------------------

Looks like it can't find mpiCC for some reason. Do I need to specify it
somewhere?

Thanks,

Arun

On 7/6/07, Arun Krishnan <krishnan_at_ttck.keio.ac.jp> wrote:
>
> Hi,
>
> I am trying to install NAMD 2.6 on an 8-way, p650 (ppc64) IBM machine
> running Linux. I
> While trying to install charm++, I ran into compile errors and was
> wondering if someone could help me out here.
>
> I used
>
> ./build charm++ mpi-linux-axp -O
>
> but got the following errors:
>
> gmake[3]: Entering directory `/home/arun/NAMD_2.6_Source/charm- 5.9
> /mpi-linux-axp/tmp/QuickThreads'
> rm -f qtmd.h
> ln -s md/axp.h qtmd.h
> cc -std1 -D__AXP__ -D__OSF1__ -I. -c -o qt.o qt.c
> cc1: error: unrecognized command line option "-std1"
> gmake[3]: *** [qt] Error 1
> gmake[3]: Leaving directory `/home/arun/NAMD_2.6_Source/charm-5.9
> /mpi-linux-axp/tmp/QuickThreads'
> gmake[2]: *** [QuickThreads/libqt.a] Error 2
> gmake[2]: Leaving directory `/home/arun/NAMD_2.6_Source/charm- 5.9
> /mpi-linux-axp/tmp'
> gmake[1]: *** [converse] Error 2
> gmake[1]: Leaving directory `/home/arun/NAMD_2.6_Source/charm-5.9
> /mpi-linux-axp/tmp'
> gmake: *** [charm++] Error 2
> -------------------------------------------------
> Charm++ NOT BUILT. Either cd into mpi-linux-axp/tmp and try
> to resolve the problems yourself, visit
>
>
> I have OpenMPI installed on this machine but I suppose since it is an smp
> machine, this would not be required? I also tried
> net-linux-axp. I get the same errors.
>
> Can someone please let me know as to what I am doing wrong?
>
> Thanks,
>
> Arun
>
>
> --
> ***********************************************
> Arun Krishnan, Ph.D,
> Assistant Professor,
> Institute for Advanced Biosciences,
> Keio University,
> Center Building,
> Tsuruoka, Yamagata 997-0035
> Japan
> Phone: +81 (0)235-29-0824
> Email: krishnan_at_ttck.keio.ac.jp
> URL: http://www.iab.keio.ac.jp/~krishnan
> <http://www.iab.keio.ac.jp/%7Ekrishnan>
> **********************************************

-- 
***********************************************
Arun Krishnan, Ph.D,
Assistant Professor,
Institute for Advanced Biosciences,
Keio University,
Center Building,
Tsuruoka, Yamagata 997-0035
Japan
Phone: +81 (0)235-29-0824
Email: krishnan_at_ttck.keio.ac.jp
URL: http://www.iab.keio.ac.jp/~krishnan
**********************************************

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 05:20:24 CST