Re: compiling NAMD on an elan-linux-ia64 arch

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Fri Apr 13 2007 - 21:33:32 CDT

Hi Vlad,
You may want to ask on the charm mailing list (see
http://lists.cs.uiuc.edu/mailman/listinfo/charm) unless someone else
here has an idea. It sounds like your elan libraries may be out of date,
but I don't have any experience with the platform so I'm not sure. Sorry
I can't help more.
Best,
Peter

Vlad Cojocaru wrote:
> Hi Peter,
>
> Thanks for your answer ..... I did follow that recipe step-by-step ....
>
> However one problem it was that the intel 7.1 compilers are not
> available anymore on the system ... So, I tried 8.1 and that's when I
> got the errors ..
>
> Alessandro mentioned in that email that he was successful with 8.1
> following the same steps ....
>
> cheers
> vlad
>
> Peter Freddolino wrote:
>> Hi Vlad,
>> I'm not familiar with the elan compile target, but you might want to
>> have a look at the changes to your Make.charm file suggested in the
>> thread at
>> http://www.ks.uiuc.edu/Research/namd/mailing_list/namd-l/4939.html.
>>
>> Peter
>>
>> Vlad Cojocaru wrote:
>>
>>> Dear NAMD users,
>>>
>>> I am trying to compile NAMD on a "elan-linux-ia64" architecture using
>>> intel 8.1 compilers ..
>>>
>>> build charm++ works fine but as I go to test it I get the error below.
>>>
>>> Does anybody have any idea how to fix this?
>>>
>>> Thanks a lot
>>> vlad
>>>
>>> ../../../bin/charmc -o pgm megatest.o groupring.o nodering.o
>>> varsizetest.o varraystest.o groupcast.o nodecast.o synctest.o fib.o
>>> arrayring.o tempotest.o packtest.o queens.o migration.o marshall.o
>>> priomsg.o priotest.o rotest.o statistics.o templates.o inherit.o
>>> reduction.o callback.o immediatering.o bitvector.o -languagecharm++
>>> /usr/lib/libelan.so: undefined reference to `elan4_unpin_region'
>>> /usr/lib/libelan.so: undefined reference to `_elan4_alloc_cmdq'
>>> /usr/lib/libelan.so: undefined reference to `elan4_pin_region'
>>> /usr/lib/libelan.so: undefined reference to `elan4_remote_setevent_eop'
>>> /usr/lib/libelan.so: undefined reference to `elan4_sendqueue_pkt'
>>> Fatal Error by charmc in directory
>>> /home/cojocaru/software/NAMD_2.6_Source/charm-5.9/elan-linux-ia64-ifort-icc/tests/charm++/megatest
>>>
>>> Command icpc -i_dynamic -rdynamic -L/usr/lib -L/usr/lib -o pgm
>>> -L../../../bin/../lib -I../../../bin/../include
>>> ../../../bin/../lib/libldb-rand.o megatest.o groupring.o nodering.o
>>> varsizetest.o varraystest.o groupcast.o nodecast.o synctest.o fib.o
>>> arrayring.o tempotest.o packtest.o queens.o migration.o marshall.o
>>> priomsg.o priotest.o rotest.o statistics.o templates.o inherit.o
>>> reduction.o callback.o immediatering.o bitvector.o moduleinit29062.o
>>> ../../../bin/../lib/libmemory-default.o
>>> ../../../bin/../lib/libthreads-default.o -lck -lconv-cplus-y -lconv-core
>>> -lconv-util -lckqt -lelan -ldl -lm returned error code 1
>>> charmc exiting...
>>> make: *** [pgm] Error 1
>>>
>>>
>>>
>>
>>
>
> --
> ----------------------------------------------------------------------------
> Dr. Vlad Cojocaru
>
> EML Research gGmbH
> Schloss-Wolfsbrunnenweg 33
> 69118 Heidelberg
>
> Tel: ++49-6221-533266
> Fax: ++49-6221-533298
>
> e-mail:Vlad.Cojocaru[at]eml-r.villa-bosch.de
>
> http://projects.villa-bosch.de/mcm/people/cojocaru/
>
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