It doesn't work with using amber files.

From: Hidekazu WATANABE (evergreen_tow_at_yahoo.co.jp)
Date: Thu Mar 29 2007 - 07:09:25 CDT

Hi, everyone.
i'd like to ask a very basic question of you.

I want to use an amber parameter file for NAMD simulation,
but the program doesn't work.
The configuration file is written as follows:
========
amber yes
ambercoor ./r800.new.pdb
parmfile ./r800.prepin
========

"r800.new.pdb" is a PDB format file,
and "r800.prepin" is amber PREP file.
Is the file of Sybyl Mol2 type, "r800.mol2" also needed?

Please show me how to let NAMD program read the amber parameter files.
These three files are attached to this E-mail.


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