data structure of neighbor list

From: bqluan (bqluan_at_uiuc.edu)
Date: Tue Aug 08 2006 - 10:37:52 CDT

Hi, I have a question about data structure of neighbor list in NAMD. If
atom A is in the neighbor list of atom B, will atom B still in the
neighbor list of atom A? It seems that B is not necessary in the
neighbor list of A if using the Newton third law to compute the forces.
But I am not sure how the neighbor list is built up in NAMD. Please help
if you know it. Thank you very much.
Binquan

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