Fwd: Fwd: Water Box size

From: snoze pa (snoze.pa_at_gmail.com)
Date: Wed Feb 15 2006 - 11:29:19 CST

Dear User,
Any help for my question.
thanks in advance
snoze

>
> snoze pa wrote:
>
> > Dear NAMD community,
> > I am doing my simulatin at NPT. My simulation is going fine till
> > heating. ut for Free MD simulation My water box size is increasing in
> > one direction. While the postion of the protein remain same. I don't
> > know what is wrong with this? I am also attaching after 1ns simulation
> > protein and waterbox snapshot.Here are two snapshot
> > 1. namdmin.png for after minimization
> > 2. namd1ns.png is after 1ns free run.
> > I don't know why my water box size is increasing in one direction.
> > thanks in advance
> > snoze
> >
> >
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