RE: set center

From: Blake Charlebois (bdc_at_mie.utoronto.ca)
Date: Fri Jun 17 2005 - 00:03:24 CDT

Are you trying to have the protein and lipid overlap in space? Or are you
trying to do something similar to what the membrane plugin does (package
require membrane)?

The "measure center", "trans", and "move" commands may be of use (see VMD
manual). You may want to look at the membrane source code.

-----Original Message-----
From: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] On Behalf
Of Swarna Patra
Sent: June 16, 2005 11:53 PM
To: namd-l_at_ks.uiuc.edu
Cc: Blake Charlebois
Subject: namd-l: set center

Hi Blake,
thanks for the reply. My question is I have a lipid and a protein. I want to

put the protein in the middle of lipid. so I want to set the center of
protein to center of lipid. if u understand it pl let me know, how I can do
that using tcl.
Swarna

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