Re: how can i demonstrate that a chain-like molecule within a membrane.

From: Chris Chipot (chipot_at_ks.uiuc.edu)
Date: Wed Feb 15 2012 - 07:27:44 CST

Dear Liu Peng,

it is a pity that you send your questions to the NAMD list when you have
friends and colleagues, who could advise you.

What kind of chain is this? How long is it? What type of lipids are you
using?

Chris

On 2/15/12 7:19 AM, superdirac wrote:
>
> Dear All.
>
> Hi.
>
> I study a system, a flexible chain-like molecule inserted in a
> membrane. I want to get a stable conformation of the chain-like
> molecule within the membrane. In order to get the stable conformation,
> a 200 ns simulation has been performed to equilibriate the sytem. Now,
> how can i demonstrate that the gotten structure is stable?
>
> Best wishes.
>
> Peng Liu
>

-- 
_______________________________________________________________________
Chris Chipot, Ph.D.                    
Theoretical and Computational Biophysics Group        
Beckman Institute
University of Illinois at Urbana-Champaign        
405 North Mathews                                 Phone: (217) 244-5711 
Urbana, Illinois 61801                            Fax:   (217) 244-6078
                            E-mail: chipot_at_ks.uiuc.edu
                                    Christophe.Chipot_at_edam.uhp-nancy.fr
                            Web:    http://www.ks.uiuc.edu/~chipot
                                    http://www.edam.uhp-nancy.fr
The light shines in the darkness, and the darkness has not overcome it.
                                                              John 1:5.
_______________________________________________________________________

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 05:24:44 CST