Energy minimization of membrane

From: R. Charbel Maroun (charbel.maroun_at_inserm.fr)
Date: Thu Feb 02 2012 - 06:37:42 CST

Hello,

When we do energy minimization with NAMD of a protein-membrane system,
do we have to give PBC in the script, just like for a
molecular dynamics calculation or is this implicitely taken into
consideration? If not, that means that the protein-membrane system is
in vacuum and could become unstable during minimization.

Greetings,

C Maroun

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