Re: water molecules

From: Boyang Wang (pkuwangboyang_at_gmail.com)
Date: Tue Jan 03 2012 - 02:51:56 CST

I think you can either select a few water molecules, or carefully select
all the water molecules. Go to representation and choose vdw, it will show.

Best,
Boyang

On Tue, Jan 3, 2012 at 2:34 PM, Norman Geist <norman.geist_at_uni-greifswald.de
> wrote:

> Hi,****
>
> ** **
>
> firstly I have to say that there is a dedicated mailings list for vmd, too.
> ****
>
> ** **
>
> But I think what you mean is maybe representation “beads” or you could use
> “vdw” for that with a coloring method “coloreid” and the right color.****
>
> ** **
>
> Norman Geist.****
>
> ** **
>
> *Von:* owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] *Im
> Auftrag von *oguz gurbulak
> *Gesendet:* Montag, 2. Januar 2012 13:04
> *An:* namd-l_at_ks.uiuc.edu
> *Betreff:* namd-l: water molecules****
>
> ** **
>
> Dear NAMD users,****
>
> ** **
>
> How can I represent water molecules ( or any segment in psf loaded dcd
> file ) with red balls ( ball representation ) in VMD ? ****
>
> ** **
>
> Thanks for your help.****
>

-- 
Boyang Wang, Ph.D.

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