RMSD trajectory

From: flavio seixas (oivalf_nix_at_yahoo.com)
Date: Fri Nov 18 2011 - 14:09:15 CST

Hi all.

My question is: What is the best choice to calculate RMSD-trajectory plot for a simulation?

The psf file plus the dcd file or the pdb file plus the dcd file?

Or does not matter?

Regards,

Flavio

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