From: Jernej Zidar (jernej.zidar_at_gmail.com)
Date: Wed Oct 19 2011 - 20:22:46 CDT
Why don't you try using the CHARMM parameters for nucleic acids instead?
"CHARMM-compatible Amber" parameters sounds like a bad idea to me.
On 20. okt. 2011, at 09:10, Ehsan Ban wrote:
> Hi Everyone,
> I'm trying to use CHARMM compatible Amber parameters to simulate dsdna from:
> Because Amber and CHARMM use different values to convert charge values to kcal/mol changes should be made to CHARMM program's pref.dat to work with these parameter files. Does anyone know how to get around this in NAMD?
> Ehsan Ban
> Rensselaer Polytechnic Institute
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