Re: Using CHARMM Compatible Amber Parameters

From: Jernej Zidar (jernej.zidar_at_gmail.com)
Date: Wed Oct 19 2011 - 20:22:46 CDT

Why don't you try using the CHARMM parameters for nucleic acids instead?

"CHARMM-compatible Amber" parameters sounds like a bad idea to me.

Regards,
Jernej

On 20. okt. 2011, at 09:10, Ehsan Ban wrote:

> Hi Everyone,
>
> I'm trying to use CHARMM compatible Amber parameters to simulate dsdna from:
> http://www.chpc.utah.edu/~cheatham/software.html
>
> Because Amber and CHARMM use different values to convert charge values to kcal/mol changes should be made to CHARMM program's pref.dat to work with these parameter files. Does anyone know how to get around this in NAMD?
>
> Regards
> Ehsan Ban
> Rensselaer Polytechnic Institute


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