Using CHARMM Compatible Amber Parameters

From: Ehsan Ban (ehsan.ban_at_gmail.com)
Date: Wed Oct 19 2011 - 20:10:30 CDT

Hi Everyone,

I'm trying to use CHARMM compatible Amber parameters to simulate dsdna from:
http://www.chpc.utah.edu/~cheatham/software.html

Because Amber and CHARMM use different values to convert charge values to
kcal/mol changes should be made to CHARMM program's pref.dat to work with
these parameter files. Does anyone know how to get around this in NAMD?

Regards
Ehsan Ban
Rensselaer Polytechnic Institute

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