AW: save the last frame as a pdb file using dcd file

From: Norman Geist (norman.geist_at_uni-greifswald.de)
Date: Thu Sep 22 2011 - 03:15:43 CDT

You can easily use vmd for that. Load your topology file. Load your DCD. Save coordinates as pdb for last frame through the menu. You can auto this with writing a little tcl script and call it with vmd. Or you can use the command “catDCD” for commandline which maybe fits your needs good also.
 
Good luck
 
Norman Geist.
 
Von: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im Auftrag von Namd Namd
Gesendet: Donnerstag, 22. September 2011 09:03
An: namd-l_at_ks.uiuc.edu
Betreff: namd-l: save the last frame as a pdb file using dcd file
 
Dear All,
 
How can I save the last frame as a pdb file using dcd file ?
 
Could you please help me to learn this procedure ?
 
Thanks for your help.
 
All the best.
 
 
 
 

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 05:24:25 CST