Query about switch function using AMBER ff99SB forcefield and NAMD simulation code

From: Madhurima Jana (tinni.217_at_gmail.com)
Date: Tue Jul 19 2011 - 06:41:25 CDT

Hi all,

I want perform atomistic MD simulation of an aqueous solution of protein
using AMBER ff99SB forcefield and NAMD simulation code. In that case shall I
use *switching on *?

Any suggestion is highly be appreciated.

Thanks in advance,
Madhurima

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