Re: clustering of trajectory

From: Jun Zhang (coolrainbow_at_yahoo.cn)
Date: Tue Jul 05 2011 - 20:18:16 CDT

Dear Bala:   I don't know whether there are related tools for NAMD specifically, but you can transform the trajectories into the formats recognizable by GROMACS, who has a tool for clustering analysis. ---------------------------------------------------------------- Jun Zhang (coolrainbow_at_yahoo.ch) Computational Chemistry Group No.94, Weijinlu Nankai University Tianjin, China   发件人: Bala subramanian <bala.biophysics_at_gmail.com> 收件人: namd-l_at_ks.uiuc.edu 发送日期: 2011年7月5日, 星期二, 下午 10:46 主题: namd-l: clustering of trajectory Friends, Someone please suggest me any tool to cluster conformations based on dihedral angle. Thanks, Bala

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