Re: namd and Fedora14

From: flavio seixas (oivalf_nix_at_yahoo.com)
Date: Mon Mar 28 2011 - 08:55:57 CDT

Hi Michael,

Thank you for your help.
I am writing to let the list know that doing as your advice, namd works fine.
However, I needed to put the namd and charmrun pre compliled files at the same folder were input files were placed:

./charmrun ++local ./namd2 +p2 input.conf > output.log

setting .bashrc our putting the compiled files on /usr/bin folder does not work.

Thank you again.

Flavio

--- On Tue, 3/22/11, Michael S. Sellers (Cont, ARL/WMRD) <michael.s.sellers.ctr_at_us.army.mil> wrote:

> From: Michael S. Sellers (Cont, ARL/WMRD) <michael.s.sellers.ctr_at_us.army.mil>
> Subject: Re: namd-l: namd and Fedora14
> To: "flavio seixas" <oivalf_nix_at_yahoo.com>
> Cc: namd-l_at_ks.uiuc.edu
> Date: Tuesday, March 22, 2011, 3:10 PM
> 1.  If this is a pre-compiled
> version of NAMD (ie Linux-x86_64), I believe they use
> "net-linux-..." compiled versions of Charm++.  So, if
> you are running locally, you'll want to execute "charmrum
> ++local namd2 +p2 input.conf"
>
> 2.  Generally it is not a good idea to run things like
> this as root.
>
>
> flavio seixas wrote:
> > Hi,
> > I was trying to run a namd simulation in an AMD Athlon
> X2 Fedora 14 Linux, when I found the following error
> message:
> >
> > [root_at_NIR set1]# charmrun namd2 +p2 input.conf >
> output.log
> > Charmrun> Couldn't find rsh program 'rsh'!
> > Charmrun> Couldn't find rsh program 'rsh'!
> > Charmrun> Error 1 returned from rsh (localhost:0)
> >
> > I do not find anything regarding this error on
> google.
> >
> > Someone have already found an error like this?
> > Regards,
> >
> >
> > Flavio
> >
> >
> >
> >
> >       
> >   

      

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