Bactenecine

From: Andres Morales N (andresmoralesn2_at_hotmail.com)
Date: Mon Mar 14 2011 - 23:11:05 CDT

Dear Users:
 
I need to simulate the interaction of the peptide (Bactenecine) with a phospholipid monolayer. So I haven’t be able to find Bactenecin’s crystal structure (pdb file) yet. Does anybody know where I could find it? Another option is to model that peptide since its amino-acid sequence, i.e, I need to make a pdb file of its random coil using special coordinates of its atoms (it is a 19-reside peptide). I haven’t worked in this before. Could I use VMD to do it? Or is there any program to do it? I hope anybody can help me.
 
Kind regards
 
 
 
 
 
 
Andrés Morales N.
Biophysics and Molecular Modelling Group
Physics Department
Escuela Politecnica Nacional, Quito-Ecuador
Ladron de Guevara E11-253.
Phone: 593-95292408
http://www.ciencias.epn.edu.ec/~biomod/
                                                

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