Re: NAMD initial coordinate file

From: Mohd Farid Ismail (farid_at_ou.edu)
Date: Thu Jan 13 2011 - 12:40:03 CST

Thank you. That works.

--Farid

On Mon, 10 Jan 2011, Chris Harrison wrote:

> Farid,
>
> Use the PDB, as long as there is a corresponding PSF NAMD will still
> be able to read it until you reach 10's of millions of atoms.
>
> Best,
> Chris
>
>
> --
> Chris Harrison, Ph.D.
> Theoretical and Computational Biophysics Group
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801
>
> char_at_ks.uiuc.edu                            Voice: 217-244-1733
> http://www.ks.uiuc.edu/~char               Fax: 217-244-6078
>
>
> On Fri, Jan 7, 2011 at 12:10 AM, Ismail, Mohd F. <farid_at_ou.edu> wrote:
>> Does NAMD take any other format for initial input file?  I want to create a
>> system with over 100,000 atom, but PDB files will start to print out ******
>> for atom number over 99,999.  Is there a way to make NAMD read charmm
>> coordinate file?
>>
>> Best,
>>
>> Farid
>>
>

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