how to generate the topology and parameter file for ligand

From: jnsong (jnsong_at_itcs.ecnu.edu.cn)
Date: Thu Dec 16 2010 - 07:45:52 CST

Dear all,

Recently, I want to do MD simulation on a protein and ligand compound
using NAMD2.7 with CHARMMb35 force field.
But I have no idea of to get topology and parameter file for the ligand.

Would you please give me some suggestions?

Thank you very much!

Attachment is the ligand whose topology and parameter file I want to
obtain.

Jianing


11.jpg

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