how to generate topology and parameter file for ligand

From: jnsong (jnsong_at_itcs.ecnu.edu.cn)
Date: Thu Dec 16 2010 - 07:40:38 CST

Dear all,

Recently, I want to do MD simulation on a protein and ligand compound
using NAMD with CHARMM force filed.
But I have no idea about how to get topology and parameter file for
the ligand.
Would you please give me some suggestions?
Thank you very much!

Attachment is the ligand I want to get topology and parameter file.

Jianing


11.jpg

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