Different Dielectric constant value for different segment

From: Madhurima Jana (tinni.217_at_gmail.com)
Date: Mon Nov 22 2010 - 07:48:39 CST

Hi,

We want to perform MD simulation of a protein in aqueous solution using
NAMD. We want to know that if it is possible to define a particular
dielectric constant value for some segments and another value for other
segments. Is it possible in NAMD?

Any suggestion is highly acceptable,
thanks,
madhurima

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