Least squares fitting of frames of trajectory

From: divya nayar (divya.alchemist_at_gmail.com)
Date: Wed Oct 27 2010 - 23:01:29 CDT

Hi,
I am doing an MD simulation of a protein solvated with water. I want to do
least-squares fitting of the frames of my trajectory against a reference
structure. How can I do it in NAMD?

Thanks in advance,
Divya

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