From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Thu Oct 14 2010 - 02:31:41 CDT
As allways, everything is in the
The standard units used by NAMD are Angstroms for length, kcal/mol for
energy, Kelvin for temperature, and bar for pressure. Wallclock or CPU times
are given in seconds unless otherwise noted.
But personally I don't see any problem with reassigning velocities.
On Wed, Oct 13, 2010 at 23:55, Courtney Taylor
> I have looked through the forums and found no response to this issue of
> Namd starting at 0 Kelvin when using a Charmm velocity pdb as a starting
> point. Has anyone seen this again, or does anyone know how to resolve this??
> Courtney Taylor
> PhD Candidate
> Department of Chemical and Biomolecular Engineering
> Vanderbilt University
> "Though the course may change sometimes the river always meets the
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