question on hydrogen bond

From: Kwee Hong (joyssstan0202_at_gmail.com)
Date: Sun Sep 05 2010 - 22:40:40 CDT

Hi.

In the namd-tutorial-unix.pdf, it mentioned that explicit hydrogen bond
terms are no longer present in the CHARMM force field and are therefore not
calculated by NAMD. Does this mean that throughout the simulation, hydrogen
bonding are not culculated? So does that mean that I can't inspect the
hydrogen bonding which is important in stabilizing my protein throughout the
simulation?

Thanks.

Regards,
Joyce

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