From: q md (mdques_at_hotmail.com)
Date: Sun Jul 04 2010 - 02:37:44 CDT
I am new to NAMD, I hope you could kindly share your experience with me how to define a o-phosphotyrosine for NAMD calculation.
I guess the parameters for 0-phosphotyrosine is well defined. However, the o-phosphotyrosine is slightly different. Other than the N- and C-terminus, the PO4 also bind to a DNA base pairs' O atom.
I wonder if I can define these parameters with NAMD.
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