distance colvar

From: Neelanjana Sengupta (senguptan_at_gmail.com)
Date: Mon Jun 07 2010 - 03:07:51 CDT

Dear NAMD community,

When the collective variable is a 'distance' between 2 atom groups, each
containing more than one atom (eg. the sidechains of two regions of a
protein), am I right in assuming that the distance refers to the centers of
mass distance of the two groups?

Thanks,
Neelanjana Sengupta

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