Re: Regarding ligand forcefield

From: ehenriques_at_qui.uc.pt
Date: Fri Apr 09 2010 - 04:52:07 CDT

This tutorial might help:
http://www.ks.uiuc.edu/Training/Tutorials/science/forcefield-tutorial/forcefield-html/

Quoting Jignesh Patel <jbp087_at_gmail.com>:

> Hello,
>
> I am new to NAMD.
>
> I want to do MD for protein with ligand.
>
> But I am not able to get, how to develop ligand forcefield for NAMD.
>
> Is there any server like dundee server which can be helpful.
>
> So please help me regarding this issue.
>
> Any kind of help is highly appreciable.
>
>
>
> --
> Best Wishes,
> Jignesh Patel
> Pharmacoinformatics,
> NIPER
>

Elsa
------------------------------------------------------------------
Elsa S. Henriques e-mail: ehenriques_at_qui.uc.pt
Investigadora Auxiliar

Biologia Estrutural e Computacional (@CNC)
e Grupo de Química Estrutural (@CCC)
Cv15 - RMB Lab
Departamento de Química - Universidade de Coimbra
3004-535 COIMBRA Portugal

Tel.: +351 23 9852080 - ext.417
Fax : +351 23 9827703

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